title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Inhibidoras_F {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/MA_HC_Inhibidoras_F.RData")
```ENSG00000104324
Statistics of ENSG00000104324 meta-analisys
kable(sig.genes.df['ENSG00000104324',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000104324 | CPQ | 0.7635428 | 1.245125 | 1.726708 | 4e-07 | 0.0437936 | 0.8342381 | 0.2457099 | 0 | 0 | 1 | 0.0001925 | 0.0018548 | 3.715602 | 2 | 2 | non | 0.6058414 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000104324_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000104324_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000104324_INFLUENCE.png")
ENSG00000108946
Statistics of ENSG00000108946 meta-analisys
kable(sig.genes.df['ENSG00000108946',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000108946 | PRKAR1A | -1.115287 | -0.839535 | -0.563783 | 0 | 0.9656188 | 0.3257753 | 0.1406924 | 0 | 0 | 1 | 4.1e-06 | 4e-05 | 5.382021 | 2 | 2 | Study43 | 0.5459577 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000108946_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000108946_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000108946_INFLUENCE.png")
ENSG00000116729
Statistics of ENSG00000116729 meta-analisys
kable(sig.genes.df['ENSG00000116729',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000116729 | WLS | -1.074774 | -0.8013114 | -0.5278484 | 0 | 0.7734833 | 0.3791416 | 0.1395245 | 0 | 0 | 1 | 1.21e-05 | 0.0001168 | 4.91655 | 2 | 2 | Study43 | 0.5716186 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000116729_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000116729_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000116729_INFLUENCE.png")
ENSG00000123416
Statistics of ENSG00000123416 meta-analisys
kable(sig.genes.df['ENSG00000123416',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000123416 | TUBA1B | -0.8350319 | -0.6384095 | -0.4417871 | 0 | 0.0013882 | 0.9702792 | 0.1003194 | 0 | 0 | 1 | 6e-07 | 5.4e-06 | 6.248763 | 2 | 2 | non | 0.5189566 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000123416_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000123416_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000123416_INFLUENCE.png")
ENSG00000138735
Statistics of ENSG00000138735 meta-analisys
kable(sig.genes.df['ENSG00000138735',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000138735 | PDE5A | 0.4475288 | 0.709071 | 0.9706132 | 1e-07 | 0.5505027 | 0.4581124 | 0.1334423 | 0 | 0 | 1 | 6.15e-05 | 0.0005931 | 4.210776 | 2 | 2 | Study43 | 0.5393447 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000138735_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000138735_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000138735_INFLUENCE.png")
ENSG00000139436
Statistics of ENSG00000139436 meta-analisys
kable(sig.genes.df['ENSG00000139436',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139436 | GIT2 | -1.230822 | -0.9510604 | -0.6712989 | 0 | 0.0541286 | 0.8160289 | 0.1427381 | 0 | 0 | 1 | 1e-07 | 1.1e-06 | 6.938154 | 2 | 2 | Study43 | 0.5263415 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000139436_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000139436_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000139436_INFLUENCE.png")
ENSG00000143248
Statistics of ENSG00000143248 meta-analisys
kable(sig.genes.df['ENSG00000143248',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000143248 | RGS5 | -1.457223 | -1.172045 | -0.886867 | 0 | 0.0118575 | 0.9132881 | 0.1455015 | 0 | 0 | 1 | 0 | 0 | 11.16628 | 2 | 2 | non | 0.533319 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000143248_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000143248_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000143248_INFLUENCE.png")
ENSG00000144619
Statistics of ENSG00000144619 meta-analisys
kable(sig.genes.df['ENSG00000144619',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000144619 | CNTN4 | -2.768401 | -2.013063 | -1.257724 | 2e-07 | 0.0011939 | 0.9724366 | 0.3853838 | 0 | 0 | 1 | 9.43e-05 | 0.0009086 | 4.025531 | 2 | 2 | non | 0.9091561 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000144619_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000144619_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000144619_INFLUENCE.png")
ENSG00000148219
Statistics of ENSG00000148219 meta-analisys
kable(sig.genes.df['ENSG00000148219',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000148219 | ASTN2 | -2.148032 | -1.600765 | -1.053499 | 0 | 0.5029195 | 0.4782201 | 0.2792227 | 0 | 0 | 1 | 1.21e-05 | 0.0001168 | 4.91655 | 2 | 2 | Study43 | 0.6811828 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000148219_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000148219_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000148219_INFLUENCE.png")
ENSG00000149289
Statistics of ENSG00000149289 meta-analisys
kable(sig.genes.df['ENSG00000149289',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000149289 | ZC3H12C | -0.938463 | -0.6893298 | -0.4401966 | 1e-07 | 0.1724463 | 0.6779468 | 0.1271111 | 0 | 0 | 1 | 3.87e-05 | 0.0003732 | 4.411918 | 2 | 2 | Study43 | 0.5593814 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000149289_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000149289_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000149289_INFLUENCE.png")
ENSG00000150672
Statistics of ENSG00000150672 meta-analisys
kable(sig.genes.df['ENSG00000150672',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000150672 | DLG2 | 0.4202615 | 0.6492493 | 0.8782371 | 0 | 0.051657 | 0.8202046 | 0.1168326 | 0 | 0 | 1 | 2.36e-05 | 0.0002272 | 4.627559 | 2 | 2 | Study43 | 0.5106315 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000150672_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000150672_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000150672_INFLUENCE.png")
ENSG00000162687
Statistics of ENSG00000162687 meta-analisys
kable(sig.genes.df['ENSG00000162687',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000162687 | KCNT2 | 0.9862438 | 1.450462 | 1.914681 | 0 | 0.3453731 | 0.5567441 | 0.2368506 | 0 | 0 | 1 | 2e-06 | 1.89e-05 | 5.707487 | 2 | 2 | Study43 | 0.6238899 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000162687_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000162687_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000162687_INFLUENCE.png")
ENSG00000164292
Statistics of ENSG00000164292 meta-analisys
kable(sig.genes.df['ENSG00000164292',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164292 | RHOBTB3 | -0.777048 | -0.5491341 | -0.3212202 | 2.3e-06 | 0.82793 | 0.3628718 | 0.1162847 | 0 | 0 | 1 | 0.0010019 | 0.0096545 | 2.99917 | 2 | 2 | Study43 | 0.5313928 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000164292_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000164292_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000164292_INFLUENCE.png")
ENSG00000167658
Statistics of ENSG00000167658 meta-analisys
kable(sig.genes.df['ENSG00000167658',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000167658 | EEF2 | -0.4804217 | -0.347479 | -0.2145363 | 3e-07 | 0.2061699 | 0.6497861 | 0.0678292 | 0 | 0 | 1 | 0.0001521 | 0.001466 | 3.817769 | 2 | 2 | Study43 | 0.5338726 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000167658_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000167658_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000167658_INFLUENCE.png")
ENSG00000169018
Statistics of ENSG00000169018 meta-analisys
kable(sig.genes.df['ENSG00000169018',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000169018 | FEM1B | -0.8414797 | -0.6227174 | -0.4039551 | 0 | 0.9126808 | 0.3394041 | 0.1116155 | 0 | 0 | 1 | 2.31e-05 | 0.0002224 | 4.636732 | 2 | 2 | Study43 | 0.55859 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000169018_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000169018_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000169018_INFLUENCE.png")
ENSG00000172264
Statistics of ENSG00000172264 meta-analisys
kable(sig.genes.df['ENSG00000172264',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000172264 | MACROD2 | 0.7835837 | 1.195787 | 1.60799 | 0 | 0.7759853 | 0.3783718 | 0.2103117 | 0 | 0 | 1 | 1.4e-05 | 0.0001348 | 4.854241 | 2 | 2 | Study43 | 0.776551 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000172264_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000172264_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000172264_INFLUENCE.png")
ENSG00000183580
Statistics of ENSG00000183580 meta-analisys
kable(sig.genes.df['ENSG00000183580',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000183580 | FBXL7 | 1.079676 | 1.706676 | 2.333677 | 1e-07 | 0.1193723 | 0.7297163 | 0.3199042 | 0 | 0 | 1 | 5.87e-05 | 0.0005653 | 4.231632 | 2 | 2 | non | 0.7989623 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000183580_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000183580_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000183580_INFLUENCE.png")
ENSG00000188229
Statistics of ENSG00000188229 meta-analisys
kable(sig.genes.df['ENSG00000188229',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000188229 | TUBB4B | -0.4115164 | -0.292727 | -0.1739377 | 1.4e-06 | 0.3655742 | 0.5454266 | 0.0606079 | 0 | 0 | 1 | 0.000618 | 0.0059554 | 3.208989 | 2 | 2 | Study43 | 0.5294922 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000188229_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000188229_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000188229_INFLUENCE.png")
ENSG00000197106
Statistics of ENSG00000197106 meta-analisys
kable(sig.genes.df['ENSG00000197106',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000197106 | SLC6A17 | -1.164826 | -0.855639 | -0.5464523 | 1e-07 | 8.61e-05 | 0.9925945 | 0.1577512 | 0 | 0 | 1 | 3.87e-05 | 0.0003732 | 4.411918 | 2 | 2 | non | 0.6194438 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000197106_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000197106_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000197106_INFLUENCE.png")
ENSG00000203879
Statistics of ENSG00000203879 meta-analisys
kable(sig.genes.df['ENSG00000203879',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000203879 | GDI1 | -1.215323 | -0.8951741 | -0.575025 | 0 | 0.8082932 | 0.3686253 | 0.1633444 | 0 | 0 | 1 | 3.32e-05 | 0.0003197 | 4.47918 | 2 | 2 | Study43 | 0.6132928 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000203879_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000203879_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Inhibidoras/F/plots/ENSG00000203879_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 16:11:05 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2